DAGchainer 06FREEDAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).Read More Rating:
SyntenyMiner 0001FREESyntenyMiner provides a user interface to navigate matches between multiple genome sequences.Read More Rating:
slclustFREEslclust: a utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters.The slclust utility is written in ANSI C++.Read More Rating:
Trinity RNA-Seq AssemblyFREEThe Trinity RNA-Seq Assembly project provides software solutions targeted to the reconstruction of full-length transcripts and alternatively spliced isoforms from Illumina RNA-Seq data.Read More Rating:
PASAFREEThe Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.Read More Rating:
MicrobiomeUtilitiesFREEA set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.Read More Rating:
AAT Genome Spliced AlignmentFREEThe AAT (Analysis and Annotation Tool) spliced genome alignment package now available as Open Source.Read More Rating:
EVidenceModeler (EVM)FREEEVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions.Read More Rating:
TransposonPSIFREETransposonPSI is an analysis tool to identify protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements.Read More Rating:
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