slclust FREE slclust: a utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. The slclust utility is written in ANSI C++. Download Rating:
Trinity RNA-Seq Assembly FREE The Trinity RNA-Seq Assembly project provides software solutions targeted to the reconstruction of full-length transcripts and alternatively spliced isoforms from Illumina RNA-Seq data. Download Rating:
AAT Genome Spliced Alignment FREE The AAT (Analysis and Annotation Tool) spliced genome alignment package now available as Open Source. Download Rating:
PASA FREE The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and... Download Rating:
MicrobiomeUtilities FREE A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology. Download Rating:
TransposonPSI FREE TransposonPSI is an analysis tool to identify protein or nucleic acid sequence homology to proteins encoded by diverse families of transposable elements. Download Rating:
EVidenceModeler (EVM) FREE EVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions. Download Rating:
DAGchainer 06 FREE DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG). Download Rating:
SyntenyMiner 0001 FREE SyntenyMiner provides a user interface to navigate matches between multiple genome sequences. Download Rating:
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