Apps by troyandodo

ZUKER

FREE
Code for predicting the 2-dimensional folding with minimum energy of a given RNA sequence.The code was written and originally released by Rune Lyngso.

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RNAslider 0

FREE
The program predicts the optimal folding of all consecutive substrings of length L of an RNA sequence of length N in O(NL) time. The algorithm is based on two papers: Wexler, Zilberstein, Ziv-Ukelson (2007), and Horesh, Wexler, Ziv-Ukelson ,Unger...

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RnaCoFold 0

FREE
The software implements a fast optimal co-folding of pairs of RNA sequences. The algorithm is described in details in the paper "A faster algorithm for RNA co-folding" by Ziv-Ukelson, Gat-Viks, Wexler, and Shamir.

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